Tutorials
- Using pycisTopic on human cerebellum single-cell multiome data
- Downloading data
- Set up
- Getting pseudobulk profiles from cell annotations
- Inferring consensus peaks
- QC
- Creating a cisTopic object
- Adding metadata to a cisTopic object
- Running scrublet
- Run models
- Model selection
- Clustering and visualization
- Topic binarization & QC
- Differentially Accessible Regions (DARs)
- Save region sets
- Gene activity
- Label transfer
- Exporting to loom